claude-scientific-skills

Skills (139)

• scientific-brainstorming

  MIT license190 lines1127 words

  Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumption...

• pyhealth

  124 lines970 words2 blocks

  Build clinical/healthcare deep-learning pipelines with PyHealth — loading EHR/signal/imaging datasets (MIMIC-III/IV, eICU, OMOP, SleepEDF, ChestXray14...

  bashpython
• aeon

  BSD-3-Clause license373 lines1065 words20 blocks

  This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, seg...

  bashpython
• matchms

  Apache-2.0 license202 lines717 words8 blocks

  Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine...

  bashpython
• iso-13485-certification

  MIT license679 lines3121 words1 blocks

  Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with...

  bash
• fluidsim

  CeCILL FREE SOFTWARE LICENSE AGREEMENT348 lines1011 words29 blocks

  Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D...

  bashpython
• torch-geometric

  422 lines1974 words17 blocks

  "Guide for building Graph Neural Networks with PyTorch Geometric (PyG). Use this skill whenever the user asks about graph neural networks, GNNs, node ...

  python
• pymatgen

  MIT license690 lines2062 words32 blocks

  Materials science toolkit. Crystal structures (CIF, POSCAR), phase diagrams, band structure, DOS, Materials Project integration, format conversion, fo...

  bashpython
• lamindb

  Apache-2.0 license389 lines1693 words4 blocks

  This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and...

  python
• dask

  BSD-3-Clause license455 lines1881 words16 blocks

  Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code beyond memory or across cluste...

  python
• scientific-visualization

  MIT license778 lines2852 words42 blocks

  Meta-skill for publication-ready figures. Use when creating journal submission figures requiring multi-panel layouts, significance annotations, error ...

  python
• literature-review

  MIT license700 lines3547 words22 blocks

  Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill sh...

  bashmarkdownpython
• hypothesis-generation

  MIT license298 lines1803 words3 blocks

  Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to formulate testable hypotheses wit...

  bashlatex
• bioservices

  GPLv3 license360 lines1204 words14 blocks

  Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow w...

  bashpython
• infographics

  564 lines2217 words24 blocks

  "Create professional infographics using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3 Pro for quality review. Integrates research-...

  bashjson
• scientific-slides

  MIT license1155 lines6367 words23 blocks

  Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research prese...

  bashmarkdown
• opentrons-integration

  Unknown572 lines1540 words24 blocks

  Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardware with full access to Protocol ...

  python
• latchbio-integration

  Unknown352 lines1226 words5 blocks

  Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchD...

  bashpython
• pptx-posters

  MIT license415 lines2020 words15 blocks

  Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly requests PowerPoint/PPTX post...

  bashcsshtmlpython
• primekg

  Unknown98 lines465 words3 blocks

  Query the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biological data including genes, drugs, diseases, phenotypes, and more.

  python